NCO/5.1.8-cpeGNU-23.09 (NCO-5.1.8-cpeGNU-23.09.eb)
Install with the EasyBuild-user module:
To access module help after installation and get reminded for which stacks and partitions the module is installed, usemodule spider NCO/5.1.8-cpeGNU-23.09.
EasyConfig:
# contributed by Luca Marsella (CSCS), updated by Samuel Omlin (CSCS)
# Adapted by Kurt Lust (kurt.lust@uantwerpen.be) for the LUMI consortium
easyblock = 'ConfigureMake'
local_GSL_version = '2.7.1' # https://ftp.gnu.org/gnu/gsl/
local_JasPer_version = '4.0.0' # https://github.com/jasper-software/jasper/releases
local_UDUNITS_version = '2.2.28' # https://artifacts.unidata.ucar.edu/service/rest/repository/browse/downloads-udunits/
local_ANTLR_NCO_version = '2.7.7' # Looks like NCO requires an antique version.
local_libdap_version = '3.20.11' # https://www.opendap.org/pub/source/
local_NCO_version = '5.1.8' # https://github.com/nco/nco/releases
name = 'NCO'
version = local_NCO_version
homepage = 'http://nco.sourceforge.net/'
whatis = [
"Description: The NCO toolkit manipulates and analyzes data stored in netCDF-accessible formats, including DAP, HDF4, and HDF5."
]
description = """
The NCO toolkit manipulates and analyzes data stored in netCDF-accessible
formats, including DAP, HDF4, and HDF5.
This version was build with cray-libsci unloaded as it causes crashes in
the tests. If work with NCO depends heavily on an optimized BLAS, it may
be very inefficient in this module.
"""
docurls = [
'Manual pages for the commands in section 1'
'Support for the info command: info nco',
]
toolchain = {'name': 'cpeGNU', 'version': '23.09'}
toolchainopts = {'opt': True, 'pic': True}
# https://github.com/nco/nco/archive/refs/tags/5.0.6.tar.gz
sources = [
{
'download_filename': '%(version)s.tar.gz',
'filename': SOURCELOWER_TAR_GZ,
'source_urls': ['https://github.com/nco/nco/archive/']
}
]
#source_urls = ['https://github.com/nco/nco/archive/']
#sources = ['%(version)s.tar.gz']
#patches = ['NCO-%(version)s_fix_build_of_cxx_interface.patch']
checksums = [
'f22c63a3cbe1947fbf06160a6ed7b6d1934aa242fbe3feeb8d1964eef266b7d5', # nco-5.1.8.tar.gz
]
builddependencies = [ # Create a reproducible build environment.
('buildtools', '%(toolchain_version)s', '', True),
]
dependencies = [
# Cray packages
('cray-hdf5', EXTERNAL_MODULE),
('cray-netcdf', EXTERNAL_MODULE),
# LUMI software stack
('GSL', local_GSL_version, '-OpenMP'), # NCO by default compiles with OpenMP enabled.
('JasPer', local_JasPer_version),
('UDUNITS', local_UDUNITS_version), # Also pulls in expat
# Contributed dependencies
('ANTLR', local_ANTLR_NCO_version, '-python3'), # It really requires this antique version!
('libdap', local_libdap_version),
]
preconfigopts = 'module unload cray-libsci ; '
# Configure will complain that it cannot find the udunits2.xml file. However, it only checks in
# some fixed locations and not in the the path pointed to by UDUNITS2_XML_PATH.
configopts = "--disable-udunits --enable-udunits2 "
# If that doesn't work, uncomment the next line instead
# configopts = "--enable-udunits --disable-udunits2 "
prebuildopts = 'module unload cray-libsci ; '
postinstallcmds = [
'mkdir -p %(installdir)s/share/licenses/%(name)s && ' +
'cp COPYING COPYRIGHT CITATION %(installdir)s/share/licenses/%(name)s',
]
sanity_check_paths = {
'files': ['bin/ncbo'],
'dirs': [],
}
sanity_check_commands = [
'ncap2 --version',
'ncatted --version',
'ncbo --version',
'ncclimo --version',
'ncecat --version',
'ncflint --version',
'ncks --version',
'ncpdq --version',
'ncra --version',
'ncremap --version',
'ncrename --version',
'ncwa --version',
]
moduleclass = 'data'